RNA structure
From Purdue Genomics Database Facility
(Redirected from RNA Splicing)
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Projects related to RNA splicing and folding
- MAASE database
- Automated classification of splicing isoforms (article pending Gribskov 11:30, 2 June 2007 (EDT))
- Mining for alternative splicing signals (article pending Gribskov 11:30, 2 June 2007 (EDT))
- graph theoretical approaches to the greatest common RNA structure problem (AKA RNA structure match)
RNA Resources
- RNAML Standard syntax of RNA information
- RNA Society Many references to RNA structure related databases and software
- RNA World Many references to RNA structure related databases and software (seems to be falling out of date, but still useful)
References
- Ivo L. Hofacker, A Statistical Characterization of the Sequence to Structure Mapping in RNA, thesis, 1994. PDF
best reference on internals of Vienna RNA package - Ivo L. Hofacker, Walter Fontana, Peter F. Stadler, Sebastian Bonhoeffer, Manfred Tacker, and Peter Schuster. Fast folding and comparison of RNA secondary structures (the Vienna RNA Package). Monatsh. Chem., 125(2):167–188, 1994. PDF
briefer reference that gives some of the Vienna RNA pseudocode
Gribskov 11:27, 2 June 2007 (EDT)
